TRI Level 2, Room 2007

Using Single-Cell Transcriptomics
to Explore Cellular Identity and
Uncover Drivers of Cellular Behaviors

Speaker: Alex K Shalek


Diversity in the mammalian immune system is essential for protecting the host against a broad range of threats, and is most clearly evident during dynamic processes such as differentiation and antigenic response. Recent years have seen transformative and intersecting advances in nanofabrication and molecular biology that enable deep profiling of low-input samples. These advances afford new and exciting opportunities to study heterogeneity in the immune response, starting at the level of a single cell, and have the potential to fundamentally advance our understanding of immune regulation in health and disease. 

Alex  will discuss how we can leverage single cell genomic approaches – and, in particular, single cell RNA-Seq – to explore the extensive functional diversity between immune cells, and thus uncover, from the “bottom-up,” distinct cell states and their molecular drivers. He will also highlight emerging high-throughput experimental strategies for achieving the statistical power necessary to reconstruct intracellular circuits, enumerate and redefine cell states and types, and transform our understanding of cellular decision-making on a genomic scale.

For more information please contact
Dr. Sumaira Hasnain, [email protected]